Bug #9594
Updated by nobu (Nobuyoshi Nakada) over 10 years ago
Thought I'd post this, let me know if I can help with more info. I've experienced it in a number of different places. No segfaults occurring when debugger is not used. matt@foo taxonworks (master *%)$ rspec spec/lib/material_spec.rb [Coveralls] Set up the SimpleCov formatter. [Coveralls] Using SimpleCov's default settings. ........./Users/matt/src/taxonworks/lib/material.rb:23 object.biocuration_classes << BiocurationClass.find(opts[:collection_objects][o][:biocuration_classes]) [18, 27] in /Users/matt/src/taxonworks/lib/material.rb 18 object = stub_object.clone 19 object.total = opts[:collection_objects][o][:total] 20 21 if opts[:collection_objects][o][:biocuration_classes] 22 debugger => 23 object.biocuration_classes << BiocurationClass.find(opts[:collection_objects][o][:biocuration_classes]) 24 end 25 26 object.notes << note.clone if note 27 object.container = container if container (rdb:1) cont /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_methods.rb:149: [BUG] Segmentation fault at 0x00000000000018 ruby 2.1.1p76 (2014-02-24 revision 45161) [x86_64-darwin13.0] -- Crash Report log information -------------------------------------------- See Crash Report log file under the one of following: * ~/Library/Logs/CrashReporter * /Library/Logs/CrashReporter * ~/Library/Logs/DiagnosticReports * /Library/Logs/DiagnosticReports for more details. -- Control frame information ----------------------------------------------- c:0055 p:0048 s:0251 e:000250 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_methods.rb:149 [FINISH] c:0054 p:---- s:0245 e:000244 CFUNC :public_send c:0053 p:0018 s:0240 e:000239 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_assignment.rb:42 c:0052 p:0070 s:0235 e:000234 BLOCK /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_assignment.rb:29 [FINISH] c:0051 p:---- s:0231 e:000230 CFUNC :each c:0050 p:0063 s:0228 e:000227 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_assignment.rb:23 c:0049 p:0053 s:0221 e:000220 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/association.rb:178 c:0048 p:0011 s:0215 e:000214 BLOCK /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/association.rb:251 c:0047 p:0125 s:0212 E:000630 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/core.rb:187 [FINISH] c:0046 p:---- s:0206 e:000205 CFUNC :new c:0045 p:0109 s:0202 e:000201 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/inheritance.rb:27 c:0044 p:0015 s:0195 e:000194 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/reflection.rb:189 c:0043 p:0013 s:0190 E:0024d0 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/association.rb:250 c:0042 p:0043 s:0186 e:000184 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/collection_association.rb:114 c:0041 p:0039 s:0180 e:000176 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb:87 c:0040 p:0011 s:0172 e:000171 BLOCK /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb:47 [FINISH] c:0039 p:---- s:0169 e:000168 CFUNC :each c:0038 p:0047 s:0166 e:000165 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb:46 c:0037 p:0037 s:0162 e:000161 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/collection_association.rb:135 c:0036 p:0034 s:0158 e:000157 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb:37 c:0035 p:0013 s:0154 e:000153 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/collection_proxy.rb:943 c:0034 p:0096 s:0150 E:000a18 BLOCK /Users/matt/src/taxonworks/lib/material.rb:23 [FINISH] c:0033 p:---- s:0146 e:000145 CFUNC :each c:0032 p:0135 s:0143 E:001138 METHOD /Users/matt/src/taxonworks/lib/material.rb:17 c:0031 p:0219 s:0134 e:000133 BLOCK /Users/matt/src/taxonworks/spec/lib/material_spec.rb:93 [FINISH] c:0030 p:---- s:0127 e:000126 CFUNC :instance_eval c:0029 p:0020 s:0124 e:000123 BLOCK /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example.rb:114 [FINISH] c:0028 p:---- s:0121 e:000120 CFUNC :call c:0027 p:0007 s:0118 e:000117 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example.rb:179 c:0026 p:0018 s:0115 e:000114 BLOCK /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-rails-2.14.1/lib/rspec/rails/adapters.rb:68 [FINISH] c:0025 p:---- s:0112 e:000111 CFUNC :instance_exec c:0024 p:0020 s:0108 e:000107 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/extensions/instance_eval_with_args.rb:16 c:0023 p:0013 s:0099 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/Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:390 [FINISH] c:0014 p:---- s:0058 e:000057 CFUNC :map c:0013 p:0011 s:0055 e:000054 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:386 c:0012 p:0068 s:0051 e:000050 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:371 c:0011 p:0010 s:0044 e:000043 BLOCK /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:372 [FINISH] c:0010 p:---- s:0041 e:000040 CFUNC :map c:0009 p:0079 s:0038 e:000037 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:372 c:0008 p:0010 s:0031 e:000030 BLOCK /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/command_line.rb:28 [FINISH] c:0007 p:---- s:0028 e:000027 CFUNC :map c:0006 p:0027 s:0025 e:000024 BLOCK /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/command_line.rb:28 c:0005 p:0020 s:0022 e:000021 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/reporter.rb:58 c:0004 p:0092 s:0017 e:000016 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/command_line.rb:25 c:0003 p:0101 s:0012 e:000011 METHOD /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/runner.rb:80 c:0002 p:0044 s:0005 e:000004 BLOCK /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/runner.rb:17 [FINISH] c:0001 p:0000 s:0002 E:002258 TOP [FINISH] /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/runner.rb:17:in `block in autorun' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/runner.rb:80:in `run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/command_line.rb:25:in `run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/reporter.rb:58:in `report' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/command_line.rb:28:in `block in run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/command_line.rb:28:in `map' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/command_line.rb:28:in `block (2 levels) in run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:372:in `run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:372:in `map' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:372:in `block in run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:371:in `run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:386:in `run_examples' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:386:in `map' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:390:in `block in run_examples' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example.rb:111:in `run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example.rb:256:in `with_around_each_hooks' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example_group.rb:340:in `run_around_each_hooks' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/hooks.rb:446:in `run_hook' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/hooks.rb:108:in `run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/hooks.rb:108:in `call' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/hooks.rb:106:in `block (2 levels) in run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example.rb:247:in `instance_eval_with_args' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/extensions/instance_eval_with_args.rb:16:in `instance_eval_with_args' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/extensions/instance_eval_with_args.rb:16:in `instance_exec' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-rails-2.14.1/lib/rspec/rails/adapters.rb:68:in `block (2 levels) in <module:MinitestLifecycleAdapter>' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example.rb:179:in `run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example.rb:179:in `call' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example.rb:114:in `block in run' /Users/matt/.rvm/gems/ruby-2.1.1/gems/rspec-core-2.14.7/lib/rspec/core/example.rb:114:in `instance_eval' /Users/matt/src/taxonworks/spec/lib/material_spec.rb:93:in `block (3 levels) in <top (required)>' /Users/matt/src/taxonworks/lib/material.rb:17:in `create_quick_verbatim' /Users/matt/src/taxonworks/lib/material.rb:17:in `each' /Users/matt/src/taxonworks/lib/material.rb:23:in `block in create_quick_verbatim' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/collection_proxy.rb:943:in `<<' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb:37:in `concat' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/collection_association.rb:135:in `concat' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb:46:in `concat_records' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb:46:in `each' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb:47:in `block in concat_records' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb:87:in `build_through_record' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/collection_association.rb:114:in `build' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/association.rb:250:in `build_record' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/reflection.rb:189:in `build_association' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/inheritance.rb:27:in `new' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/inheritance.rb:27:in `new' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/core.rb:187:in `initialize' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/association.rb:251:in `block in build_record' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/association.rb:178:in `initialize_attributes' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_assignment.rb:23:in `assign_attributes' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_assignment.rb:23:in `each' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_assignment.rb:29:in `block in assign_attributes' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_assignment.rb:42:in `_assign_attribute' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_assignment.rb:42:in `public_send' /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/attribute_methods.rb:149:in `method_missing' -- C level backtrace information ------------------------------------------- 0 libruby.2.1.0.dylib 0x00000001036cc7ad rb_vm_bugreport + 141 1 libruby.2.1.0.dylib 0x000000010359581d report_bug + 285 2 libruby.2.1.0.dylib 0x00000001035956f3 rb_bug + 179 3 libruby.2.1.0.dylib 0x0000000103654ae9 sigsegv + 153 4 libsystem_platform.dylib 0x00007fff91e235aa _sigtramp + 26 5 libruby.2.1.0.dylib 0x00000001036bade7 rb_method_entry_without_refinements + 55 6 ??? 0x00007fa4102069e0 0x0 + 140342621923808 -- Other runtime information ----------------------------------------------- * Loaded script: /Users/matt/.rvm/gems/ruby-2.1.1/bin/rspec * Loaded features: 0 enumerator.so 1 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/2.1.0/x86_64-darwin13.0/enc/encdb.bundle 2 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/2.1.0/x86_64-darwin13.0/enc/trans/transdb.bundle 3 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/2.1.0/x86_64-darwin13.0/rbconfig.rb 4 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/compatibility.rb 5 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/defaults.rb 6 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/deprecate.rb 7 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/errors.rb 8 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/version.rb 9 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/requirement.rb 10 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/platform.rb 11 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/basic_specification.rb 12 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/stub_specification.rb 13 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/util/stringio.rb 14 /Users/matt/.rvm/rubies/ruby-2.1.1/lib/ruby/site_ruby/2.1.0/rubygems/specification.rb 15 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/Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_association.rb 2248 /Users/matt/src/taxonworks/app/models/repository.rb 2249 /Users/matt/src/taxonworks/app/models/biocuration_class.rb 2250 /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/associations/has_many_through_association.rb 2251 /Users/matt/src/taxonworks/app/models/biocuration_classification.rb 2252 /Users/matt/.rvm/gems/ruby-2.1.1/gems/activerecord-4.0.3/lib/active_record/null_relation.rb [NOTE] You may have encountered a bug in the Ruby interpreter or extension libraries. Bug reports are welcome. For details: http://www.ruby-lang.org/bugreport.html Abort trap: 6